Real-Time PCR Recommended Panels

Real-Time PCR Recommended Panels2020-07-15T18:46:17+00:00

Individual PCR Assays-Virus

Test Code Abbreviation Agent Sample type
10533 RPyV2 Rat Polyoma Virus-2
10443 MPUL Mycoplasma pulmonis
10442 MART Mycoplasma arthritidis
10441 Myco spp Mycoplasma generic
10530 ROTA Rotavirus
10574 MCPV Mouse Chapparvovirus
10529 MAV-2 Mouse Adenovirus 2
10476 IDIR IDIR
10526 GpADV Guinea Pig Adenovirus
10570 GpPIV-3 Guinea Pig Parainfluenze-3
10423 ECTR Ectromelia Virus Spleen, Skin lesion, Feces
10425 GPCMV Guinea Pig CMV Spleen, Salivary Gland, Oral Swab
10433 KV K Virus (Mouse Pneumonitis Virus) Kidney, Mesenteric Lymph node, Feces
10434 LDHV Lactate Dehydrogenase Elevating Virus Spleen, Serum
10435 LCMV Lymphocyctic Chorionmeningitis Virus Brain, Kidney, Feces
10436 MAV Mouse Adenovirus FL, K87 Lung, Intestines, Feces
10438 MHV Mouse Hepatitis Virus Mesenteric Lymph Node, Intestines, Feces
10437 MCMV Murine Cytomegalovirus Spleen, Salivary Gland, Oral Swab
10439 EDIM Rotavirus/Epizootic Diarrhea of Infant Mice Intestines, Feces
10460 MTV Mouse Thymic Virus Salivary Gland, Oral Swab, Feces
10440 MNV Murine Norovirus Mesenteric Lymph Node, Intestines, Feces
10452 PVM Pneumonia Virus of Mice Trachea, Lung, Oral Swab, Feces
10453 POLY Polyoma Virus Skin, Mammary Gland, Kidney, Feces
10454 POLY/K Polyoma Virus/K Virus Kidney, Feces
10456 REO Respiratory Enteric Virus Liver, Lung, Intestines, Feces
10455 RCV/SDAV Rat Coronavirus Salivary Gland, Harderian Gland, Oral Swab, Feces
10457 SEN Sendai Virus Trachea, Lung, Oral Swab, Feces
10459 TMEV/GD7 Theiler’s Mouse Encephalomyelitis Virus Intestines, Feces
Hantavirus
10426 HAN Hantaan Virus Kidney, Feces
10401 PUUV Puumula Virus Kidney, Feces
10402 SINV Sin Nombre Virus Kidney, Feces
10403 SEOV Seoul Virus Kidney, Feces
Parvovirus
10447 MMV Mouse Minute Virus Mesenteric Lymph Node, Intestines, Spleen, Feces
10448 MPV Mouse Parvovirus Mesenteric Lymph Node, Intestines, Spleen, Feces
10450 MMV/MPV Mouse Minute Virus/Mouse Parvovirus Mesenteric Lymph Node, Intestines, Spleen, Feces
10445 H-1 Toolan’s H-1 Virus Mesenteric Lymph Node, Intestines, Spleen, Feces
10446 KRV Killham Rat Virus Mesenteric Lymph Node, Intestines, Spleen, Feces
10449 KRV/H-1 Killham Rat Virus/Toolan’s H-1 Virus Mesenteric Lymph Node, Intestines, Spleen, Feces
10473 RMV Rat Minute Virus Mesenteric Lymph Node, Intestines, Spleen, Feces
10474 RPV Rat Parvovirus Mesenteric Lymph Node, Intestines, Spleen, Feces
10444 PARVO Parvovirus Generic Mesenteric Lymph Node, Intestines, Spleen, Feces

Individual PCR Assays-Parasitology

Test Code Abbreviation Agent Sample Type
10527 Ancylostoma spp.(dog hookworm)
10524 DEMO Demodex
10532 COC Coccidia (Eimeria spp.)
10420 ECUN Encephalitozoon cuniculi Urine, Kidney, Brain, Feces
10479 FUR Furmites Skin Swab, Cage Swab
10461 PIN Pinworm (Syphacia & Aspicularis) Feces
10478 CRYP Cryptosporidium spp. Feces
10494 EIME Eimeria spp. Feces
10493 EMUR Entamoeba muris Feces
10520 RNAN Rodentolepis nano Feces
10521 HDIM Hymenolepis diminuta (rat tapeworm) Feces
10492 TMUR Trichomonas muris Feces
10498 GMUR Giardia muris Feces
10487 GIAR Giardia spp. Feces
10486 SMUR Spironucleus muris Feces

Individual PCR Assays-Bacteria

Test Code Abbreviation Agent Sample Type
10482 T.CUN Treponema cuniculi
10523 STR.B-HEMO B-hemolytic Streptococcus (Groups A, B, C, G)
10522 STAX Staphylococcus xylosus
10415 PNEU Pneumocystis spp
10414 PMUR Pneumocystis murina
10451 PCAR Pneumocystis carinii
10531 PAST Pasterurella spp.
10413 PMUL Pasteurella multocida
10528 KLEB SPP Klebsiella spp.
10573 LEPTO Leptospira
10525 HMASTO Helicobacter mastomyrinus
10420 ECUN Encephalitozoon cuniculi
10571 CHAC2 Corynebacterium spp HAC2
10491 CDIFF Clostridium difficile
10424 CARB Cilia Associated Respiratory Bacillus Trachea, Lung, Oral Swab, Feces
10421 CPIL Clostridium piliforme Cecum, Feces
10480 BBRO Bordetella bronchiseptica Trachea, Oral Swab, Feces
10404 BHIN Bordetella hinzii Trachea, Oral Swab, Feces
10405 CAMPY Campylobacter spp. Feces
10406 CCOL Campylobacter coli Feces
10407 CJEJ Campylobacter jejuni Feces
10408 CROD Citrobacteter rodentium Colon, Feces
10422 CBOV Corynebacterium bovis Skin Swab, Feces
10409 CKUT Corynebacterium kutscheri Oral Swab, Feces
10427 Helico Helicobacter generic Cecum, Feces
10428 HBIL Helicobacter bilis Cecum, Feces
10429 HHEP Helicobacter hepaticus Cecum, Feces
10462 HGAN Helicobacter ganmani Cecum, Feces
10430 HROD Helicobacter rodentium Cecum, Feces
10431 HTYPH Helicobacter typhlonicus Cecum, Feces
10432 Helico MULT Helico MULT Cecum, Feces
10410 LINT Lawsonia intracellularis Feces
10411 KOXY Klebisella oxytoca Feces
10412 KPNE Klebisella pneumoniae Feces
10443 MPUL Mycoplasma pulmonis Oral Swab, Feces
14013 PMUL Pasteurella multocida Oral Swab, Feces
10463 PPNEU Pasterurella pneumotropica Oral Swab, Feces
10416 PMIR Proteus mirabilis Feces
 10417 PAER Pseudomonas aeruginosa Feces
 10418 SALM Salmonella spp. Feces
10458 SAUR Staphylococcus aureus Skin Swab, Oral Swab, Feces
10419 SAGA Streptococcus agalactiae Oral Swab, Feces
10495 SCAN Streptococcus canis Oral Swab, Feces
10496 SEQU Streptococcus equi subs. Zooepidemicus Oral Swab, Feces
10464 SMONI Streptobacillus moniliformis Oral Swab, Feces
10465 SPNE Streptococcus pneumoniae Oral Swab, Feces
10497 SPYO Streptococcus pyogenes Oral Swab, Feces

Individual PCR Assays-Fungi

Test Code Abbreviation Agent Sample Type
10415 PNEU Pneumocystis spp. Lung, Oral Swab, Feces
10451 PCAR Pneumocystis carinii Lung, Oral Swab, Feces
10414 PMUR Pneumocystis murina Lung, Oral Swab, Feces

Human Pathogen Testing

Test Code Abbreviation Agent Sample Type
10568 EBV Ebstien Barr virus

Swine Pathogen Testing

Test Code Abbreviation Agent Sample Type
10572 ROTA Pig Rotavirus A,B,C
10576 DENG Dengue virus

Non-Human Primate

Test Code Test
8597 2019-nCoV (SARS-CoV-2) -RT-PCR
8574 ABO phenotyping
8500 B virus
8573 Burkholderia pseudomallei
8590 Campylobacter coli
8554 Campylobacter screen (genus-specific)
8556 Campylobacter jejuni
8579 Chikungunya virus
8501 CMV (Cytomegalovirus)
8541 CMV African green monkey (SA6)
8585 Cryptosporidium spp.
8539 EMCV (Encephalomyocarditis virus)
8567 Filovirus
8586 Giardia spp.
8561 Helicobacter screen (genus-specific)
8520 Hepatitis B genotype A-H
8548 Hepatitis B genotype D
8538 Klebsiella pneumoniae rmpA/magA genotyping
8557 Lawsonia intracellularis
8532 Leptosporia
8549 Lymphocryptovirus
8589 Lymphocryptovirus(marmoset)
8534 Malaria
8566 Male Sex
8535 Mamu-A*01 screen
8536 Mamu-A*01 sequencing confirmation
8582 Measles RT
8587 MRSA (Methicillin-Resistant Staphylococcus aureus)
8527 Mycobacterium (genus-specific)
8529 Mycobacterium tuberculosis complex (MTC)
8530 M. tuberculosis and M. bovis
8555 Respiratory syncytial virus (RSV)
8550 Salmonella
8551 Shigella
8531 Salmonella/Shigella
8504 SFV(Simian foamy virus)-African green monkey
8505 SFV-Baboon
8506 SFV-Chimpanzee
8507 SFV-Macaque
8508 SIV(Simian immunodeficiency virus)-African green monkey, AGM-3
8510 SIV-Chimpanzee
8509 SIV-Macaque
8559 SIV screen (genus-specific)
8580 Simian Adenovirus (SAdV) – real time PCR
8092 Simian Parvovirus (SPV)
8511 SRV/D screen (SRV-1,2,3,4,5,8)
8512 SRV-1 (SRV/D subtype 1)
8513 SRV-2 (SRV/D subtype2)
8514 SRV-3 (SRV/D subtype 3)
8553 SRV-4 (SRV /D subtype 4)
8515 SRV-5 (SRV/D subtype 5)
8591 SRV-8 (SRV/D subtype 8)
8516 STLV-1
8517 SV40
8552 Simian Varicella Virus (SVV)
8583 Trypanosoma cruzi kDNA
8540 Trypanosoma cruzi nDNA
8558 Yersinia (genus-specific) screen
8543 Yersinia enterocolitica
8542 Yersinia pseudotuberculosis
8577 Yersinia pseudoturberculosis genotyping
8581 Zika virus